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1

Efficient Methods for Parameter Estimation of Ordinary and Partial Differential Equation Models of Viral Hepatitis Kinetics

Churkin, Alexander, Lewkiewicz, Stephanie, Reinharz, Vladimir, Dahari, Harel, Barash, Danny

Journal:

Year:

2020

File:

PDF, 4.15 MB

2020

2

SPIE Proceedings [SPIE International Conference on Lasers, Applications, and Technologies '07 - Minsk, Belarus (Monday 28 May 2007)] International Conference on Lasers, Applications, and Technologies 2007: Advanced Lasers and Systems - Pulsed inductive atomic fluorine laser

Razhev, Alexander M., Churkin, Dmitry S., Orlovich, Valentin A., Panchenko, Vladislav, Scherbakov, Ivan A.

Year:

2007

Language:

english

File:

PDF, 216 KB

english, 2007

3

SPIE Proceedings [SPIE SPIE Photonics Europe - Brussels, Belgium (Monday 14 April 2014)] Nonlinear Optics and Its Applications VIII; and Quantum Optics III - NLSE-based model of a random distributed feedback fiber laser

Eggleton, Benjamin J., Gaeta, Alexander L., Broderick, Neil G. R., Sergienko, Alexander V., Rauschenbeutel, Arno, Durt, Thomas, Smirnov, Sergey V., Churkin, Dmitry V.

Year:

2014

Language:

english

File:

PDF, 726 KB

english, 2014

4

SPIE Proceedings [SPIE SPIE Photonics Europe - Brussels, Belgium (Monday 14 April 2014)] Nonlinear Optics and Its Applications VIII; and Quantum Optics III - Nonlinear mixing and mode correlations in a short Raman fiber laser

Eggleton, Benjamin J., Gaeta, Alexander L., Broderick, Neil G. R., Sergienko, Alexander V., Rauschenbeutel, Arno, Durt, Thomas, Vatnik, I. D., Gorbunov, O. A., Churkin, D. V.

Year:

2014

Language:

english

File:

PDF, 484 KB

english, 2014

5

BIOINFORMATIC ANALYSIS OF THE NEUTRALITY OF RNA SECONDARY STRUCTURE ELEMENTS ACROSS GENOTYPES REVEALS EVIDENCE FOR DIRECT EVOLUTION OF GENETIC ROBUSTNESS IN HCV

CHURKIN, ALEXANDER, COHEN, MORIAH, SHEMER-AVNI, YONAT, BARASH, DANNY

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2010

Language:

english

File:

PDF, 1007 KB

english, 2010

6

SPIE Proceedings [SPIE SPIE Photonics Europe - Brussels, Belgium (Sunday 3 April 2016)] Nonlinear Optics and its Applications IV - Dissipative parametric modulation instability and pattern formation in nonlinear optical systems

Eggleton, Benjamin J., Broderick, Neil G. R., Gaeta, Alexander L., Perego, A. M., Tarasov, N., Churkin, D. V., Turitsyn, S. K., Staliunas, K.

Year:

2016

Language:

english

File:

PDF, 541 KB

english, 2016

7

On topological indices for small RNA graphs

Churkin, Alexander, Gabdank, Idan, Barash, Danny

Journal:

Computational Biology and Chemistry

Year:

2012

Language:

english

File:

PDF, 666 KB

english, 2012

8

A Robust and Efficient Numerical Method for RNA-Mediated Viral Dynamics

Reinharz, Vladimir, Churkin, Alexander, Dahari, Harel, Barash, Danny

Journal:

Frontiers in Applied Mathematics and Statistics

Year:

2017

Language:

english

File:

PDF, 2.93 MB

english, 2017

9

All-fiber widely tunable Raman fiber laser with controlled output spectrum

Babin, Sergey A., Churkin, Dmitriy V., Kablukov, Sergey I., Rybakov, Michail A., Vlasov, Alexander A.

Journal:

Year:

2007

Language:

english

File:

PDF, 107 KB

english, 2007

10

SPIE Proceedings [SPIE Atomic and Molecular Pulsed Lasers VII - Tomsk, Russia (Monday 10 September 2007)] Atomic and Molecular Pulsed Lasers VII - Nitrogen, atomic fluorine and CO2 lasers excited by a pulsed inductive discharge

Razhev, Alexander M., Zhupikov, Andrey A., Churkin, Dmitry S., Tarasenko, Victor F.

Year:

2008

Language:

english

File:

PDF, 325 KB

english, 2008

11

[IEEE 2018 48th European Microwave Conference (EuMC) - Madrid (2018.9.23-2018.9.27)] 2018 48th European Microwave Conference (EuMC) - Top-Layer Wideband Transition from Waveguide to Planar Differential Line for 60 GHz Applications

Churkin, Sergey, Mozharovskiy, Andrey, Myskov, Alexander, Artemenko, Alexey, Maslennikov, Roman

Year:

2018

File:

PDF, 675 KB

2018

12

Modeling-Based Response-Guided Glecaprevir-Pibrentasvir Therapy for Chronic Hepatitis C to Identify Patients for Ultrashort Treatment Duration

Dasgupta, Swikriti, Imamura, Michio, Gorstein, Evan, Nakahara, Takashi, Tsuge, Masataka, Churkin, Alexander, Yardeni, David, Etzion, Ohad, Uprichard, Susan L, Barash, Danny, Cotler, Scott J, Dahari, H

Journal:

The Journal of Infectious Diseases

Year:

2020

File:

PDF, 235 KB

2020

13

SPIE Proceedings [SPIE Laser Optics 2006: High-Power Gas Lasers - St. Petersburg, Russian Federation (Monday 26 June 2006)] Laser Optics 2006: High-Power Gas Lasers - Gas lasers excited by a pulsed inductive discharge

Razhev, Alexander M., Danilov, Oleg B., Mekhitarian, Vagram M., Churkin, Dmitry S., Zhupikov, Andrey A.

Year:

2006

Language:

english

File:

PDF, 805 KB

english, 2006

14

Modeling based response guided therapy in subjects with recent hepatitis C infection

Gorstein, Evan, Martinello, Marianne, Churkin, Alexander, Dasgupta, Swikriti, Walsh, Kevin, Applegate, Tanya L., Yardeni, David, Etzion, Ohad, Uprichard, Susan L., Barash, Danny, Cotler, Scott J., Mat

Journal:

Antiviral Research

Year:

2020

File:

PDF, 691 KB

2020

15

RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences

Assaf Avihoo, Alexander Churkin, Danny Barash

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 608 KB

english, 2011

16

Efficient procedures for the numerical simulation of mid-size RNA kinetics

Iddo Aviram, Ilia Veltman, Alexander Churkin…

Journal:

Algorithms for Molecular Biology

Year:

2012

Language:

english

File:

PDF, 530 KB

english, 2012

17

In-situ measurements of frost penetration and frost heave by automatic monitoring system

Korshunov, Aleksei A., Churkin, Sergei V., Nevzorov, Alexander L.

Journal:

Japanese Geotechnical Society Special Publication

Year:

2016

File:

PDF, 668 KB

2016

18

AIP Conference Proceedings [Author(s) INTERNATIONAL CONFERENCE OF NUMERICAL ANALYSIS AND APPLIED MATHEMATICS (ICNAAM 2017) - Thessaloniki, Greece (25–30 September 2017)] - HCVMultiscaleDyn: A simulator for the multiscale model of hepatitis C virus dynamics

Churkin, Alexander, Reinharz, Vladimir, Dahari, Harel, Barash, Danny

Year:

2018

Language:

english

File:

PDF, 272 KB

english, 2018

19

RNAthermsw: Direct Temperature Simulations for Predicting the Location of RNA Thermometers

Churkin, Alexander, Avihoo, Assaf, Shapira, Michal, Barash, Danny, Uversky, Vladimir N.

Journal:

Year:

2014

Language:

english

File:

PDF, 575 KB

english, 2014

20

SPIE Proceedings [SPIE International Conference on Lasers, Applications, and Technologies '07 - Minsk, Belarus (Monday 28 May 2007)] International Conference on Lasers, Applications, and Technologies 2007: Advanced Lasers and Systems - 337 nm molecular nitrogen laser excited by pulsed inductive discharge

Razhev, Alexander M., Churkin, Dmitry S., Orlovich, Valentin A., Panchenko, Vladislav, Scherbakov, Ivan A.

Year:

2007

Language:

english

File:

PDF, 260 KB

english, 2007

21

In-situ measurements of frost penetration and frost heave by automatic monitoring system

Korshunov, Aleksei A., Churkin, Sergei V., Nevzorov, Alexander L.

Journal:

Japanese Geotechnical Society Special Publication

Year:

2016

Language:

english

File:

PDF, 668 KB

english, 2016

22

Structural Analysis of Single-Point Mutations Given an RNA Sequence: A Case Study with RNAMute

Churkin, Alexander, Barash, Danny

Journal:

EURASIP Journal on Advances in Signal Processing (Hindawi Publishing Corporation)

Year:

2006

Language:

english

File:

PDF, 1.12 MB

english, 2006

23

A Parameter Estimation Method for Multiscale Models of Hepatitis C Virus Dynamics

Reinharz, Vladimir, Churkin, Alexander, Lewkiewicz, Stephanie, Dahari, Harel, Barash, Danny

Journal:

Bulletin of Mathematical Biology

Year:

2019

Language:

english

File:

PDF, 2.36 MB

english, 2019

24

SPIE Proceedings [SPIE SPIE Photonics Europe - Brussels, Belgium (Sunday 3 April 2016)] Nonlinear Optics and its Applications IV - Constructing eigenmode excitation spectrum in synthetic photonic lattices using optical heterodyning

Eggleton, Benjamin J., Broderick, Neil G. R., Gaeta, Alexander L., Tikan, A. M., Vatnik, I. D., Churkin, D. V., Sukhorukov, A. A.

Year:

2016

Language:

english

File:

PDF, 2.10 MB

english, 2016

25

SPIE Proceedings [SPIE SPIE Proceedings - (Sunday 12 February 2012)] - Excimer KrCl (223 nm) laser with the efficiency of 1.0% and 0.7 J output energy

Razhev, Alexander M., Zhupikov, Andrey A., Kargapol'tsev, Evgeny S., Churkin, Dmitry S., Tarasenko, Victor F., Mayer, Georgy, Petrash, Gueorgii G.

Year:

2012

Language:

english

File:

PDF, 214 KB

english, 2012

26

In silicowhole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions

Abdel Aouacheria, Vincent Navratil, Ricardo López-Pérez, Norma C Gutiérrez, Alexander Churkin, Danny Barash, Dominique Mouchiroud, Christian Gautier

Journal:

Year:

2007

Language:

english

File:

PDF, 377 KB

english, 2007

27

SPIE Proceedings [SPIE SPIE Photonics Europe - Brussels, Belgium (Monday 14 April 2014)] Nonlinear Optics and Its Applications VIII; and Quantum Optics III - Influence of the generated power, measurement bandwidth, and noise level on intensity statistics of a quasi-CW Raman fiber laser

Eggleton, Benjamin J., Gaeta, Alexander L., Broderick, Neil G. R., Sergienko, Alexander V., Rauschenbeutel, Arno, Durt, Thomas, Gorbunov, Oleg A., Sugavanam, Srikanth, Churkin, Dmitry V.

Year:

2014

Language:

english

File:

PDF, 303 KB

english, 2014

28

RNAmute: RNA secondary structure mutation analysis tool

Alexander Churkin, Danny Barash

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.19 MB

english, 2006

29

An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions

Alexander Churkin, Danny Barash

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.10 MB

english, 2008

30

SPIE Proceedings [SPIE International Conference on Lasers, Applications, and Technologies '07 - Minsk, Belarus (Monday 28 May 2007)] International Conference on Lasers, Applications, and Technologies 2007: High-Power Lasers and Applications - High-efficient discharge-pumped ArF (193 nm) excimer laser with a TPI thyratron as a high-voltage switch

Panchenko, Vladislav, Razhev, Alexander M., Zhupikov, Andrey A., Golubev, Vladimir, Ionin, Andrey, Churkin, Dmitry S., Chumakov, Alexander

Year:

2007

Language:

english

File:

PDF, 216 KB

english, 2007

31

SPIE Proceedings [SPIE SPIE Proceedings - (Sunday 12 February 2012)] - Laser action on the F, He, Ne, Ar atoms and XeCl and XeF molecules excited by an inductive transverse discharge

Razhev, Alexander M., Mekhitarian, Vagram M., Zhupikov, Andrey A., Churkin, Dmitry S., Tarasenko, Victor F., Mayer, Georgy, Petrash, Gueorgii G.

Year:

2012

Language:

english

File:

PDF, 911 KB

english, 2012

32

incaRNAfbinv 2.0 - A webserver and software with motif control for fragment-based design of RNAs

Retwitzer, Matan Drory, Reinharz, Vladimir, Churkin, Alexander, Ponty, Yann, Waldispühl, Jérôme, Barash, Danny, Valencia, Alfonso

Journal:

Year:

2020

Language:

english

File:

PDF, 277 KB

english, 2020

33

RNA dot plots: an image representation for RNA secondary structure analysis and manipulations

Churkin, Alexander, Barash, Danny

Journal:

Wiley Interdisciplinary Reviews: RNA

Year:

2013

Language:

english

File:

PDF, 478 KB

english, 2013

34

Design of RNAs: comparing programs for inverse RNA folding

Churkin, Alexander, Retwitzer, Matan Drory, Reinharz, Vladimir, Ponty, Yann, Waldispühl, Jérôme, Barash, Danny

Journal:

Briefings in Bioinformatics

Year:

2017

Language:

english

File:

PDF, 456 KB

english, 2017

35

[IEEE 2018 48th European Microwave Conference (EuMC) - Madrid (2018.9.23-2018.9.27)] 2018 48th European Microwave Conference (EuMC) - Top-Layer Wideband Transition from Waveguide to Planar Differential Line for 60 GHz Applications

Churkin, Sergey, Mozharovskiy, Andrey, Myskov, Alexander, Artemenko, Alexey, Maslennikov, Roman

Year:

2018

Language:

english

File:

PDF, 675 KB

english, 2018

36

A Parameter Estimation Method for Multiscale Models of Hepatitis C Virus Dynamics

Reinharz, Vladimir, Churkin, Alexander, Lewkiewicz, Stephanie, Dahari, Harel, Barash, Danny

Journal:

Bulletin of Mathematical Biology

Year:

2019

File:

PDF, 2.36 MB

2019

37

SPIE Proceedings [SPIE XVI International Symposium on Gas Flow, Chemical Lasers, and High-Power Lasers - Gmunden, Austria (Monday 4 September 2006)] XVI International Symposium on Gas Flow, Chemical Lasers, and High-Power Lasers - Pulsed gas lasers excited by an inductive discharge

Razhev, Alexander M., Churkin, Dmitry S., Zhupikov, Andrey A., Schuöcker, Dieter

Year:

2007

Language:

english

File:

PDF, 267 KB

english, 2007

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